Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
STAD rs11799413 chr1:227270914 T/C 0 406 14.27 14.23 1.48 KM Plot
STAD rs11801994 chr1:227409863 G/A 0 405 14.27 14.45 1.48 KM Plot
STAD rs11803590 chr1:227406223 C/T 0 404 14.25 14.45 1.48 KM Plot
STAD rs11806820 chr1:227288571 C/T 0 405 14.37 14.15 1.48 KM Plot
STAD rs11808928 chr1:227393959 T/C 0 405 14.27 14.45 1.48 KM Plot
STAD rs11809998 chr1:227331349 T/A 0 405 14.37 14.15 1.48 KM Plot
STAD rs11869613 chr17:41711955 C/A 2.79E-13 402 14.2 20.23 3.43 KM Plot
STAD rs12039586 chr1:196997452 C/G 1.34E-7 405 5.8 17.05 14.13 KM Plot
STAD rs12118640 chr1:11244489 A/G 2.32E-5 406 2.73 13.37 14.27 KM Plot
STAD rs12128678 chr1:182733278 T/C 3.47E-5 399 14.23 14.8 4.75 KM Plot
STAD rs12189706 chr6:90313937 C/A 2.9E-5 399 14.07 17.03 2.73 KM Plot
STAD rs12207623 chr6:71920912 G/A 1.22E-5 396 14.87 13.6 4.42 KM Plot
STAD rs12287110 chr11:2771120 A/T 3.29E-5 393 15.23 14.77 11.62 KM Plot
STAD rs12360807 chr11:94077690 C/T 4.67E-5 406 14.65 13.7 7.27 KM Plot
STAD rs12401556 chr1:227269311 G/A 0 402 14.37 14.23 1.48 KM Plot